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omop_cdm_bigquery_to_postgress_extraction [2020/06/26 12:33] podalv |
omop_cdm_bigquery_to_postgress_extraction [2020/06/26 12:35] podalv |
create table source_to_concept_map(source_code varchar,source_concept_id bigint,source_vocabulary_id varchar,source_code_description varchar,target_concept_id bigint,target_vocabulary_id varchar,valid_start_DATE date,valid_end_DATE date,invalid_reason varchar, load_table_id varchar, load_row_id bigint); | create table source_to_concept_map(source_code varchar,source_concept_id bigint,source_vocabulary_id varchar,source_code_description varchar,target_concept_id bigint,target_vocabulary_id varchar,valid_start_DATE date,valid_end_DATE date,invalid_reason varchar, load_table_id varchar, load_row_id bigint); |
create table specimen(specimen_id bigint,person_id bigint,specimen_concept_id bigint,specimen_type_concept_id bigint,specimen_DATE date,specimen_DATETIME timestamp,quantity decimal,unit_concept_id bigint,anatomic_site_concept_id bigint,disease_status_concept_id bigint,specimen_source_id bigint,specimen_source_value varchar,unit_source_value varchar,anatomic_site_source_value varchar,disease_status_source_value varchar); | create table specimen(specimen_id bigint,person_id bigint,specimen_concept_id bigint,specimen_type_concept_id bigint,specimen_DATE date,specimen_DATETIME timestamp,quantity decimal,unit_concept_id bigint,anatomic_site_concept_id bigint,disease_status_concept_id bigint,specimen_source_id bigint,specimen_source_value varchar,unit_source_value varchar,anatomic_site_source_value varchar,disease_status_source_value varchar); |
create table visit_detail(visit_detail_id bigint,person_id bigint,visit_detail_concept_id bigint,visit_detail_start_DATE date,visit_detail_start_DATETIME timestamp,visit_detail_end_DATE date,visit_detail_end_DATETIME timestamp,visit_detail_type_concept_id bigint,provider_id bigint,care_site_id bigint,admitting_source_concept_id bigint,discharge_to_concept_id bigint,preceding_visit_detail_id bigint,visit_detail_source_value varchar,visit_detail_source_concept_id bigint,admitting_source_value varchar,discharge_to_source_value varchar,visit_detail_parent_id bigint,visit_occurrence_id bigint,unit_id varchar, unit_id varchar, load_table_id varchar); | create table visit_detail(visit_detail_id bigint,person_id bigint,visit_detail_concept_id bigint,visit_detail_start_DATE date,visit_detail_start_DATETIME timestamp,visit_detail_end_DATE date,visit_detail_end_DATETIME timestamp,visit_detail_type_concept_id bigint,provider_id bigint,care_site_id bigint,admitting_source_concept_id bigint,discharge_to_concept_id bigint,preceding_visit_detail_id bigint,visit_detail_source_value varchar,visit_detail_source_concept_id bigint,admitting_source_value varchar,discharge_to_source_value varchar,visit_detail_parent_id bigint,visit_occurrence_id bigint,trace_id varchar, unit_id varchar, load_table_id varchar); |
create table visit_occurrence(visit_occurrence_id bigint not null,person_id bigint not null,visit_concept_id bigint not null,visit_start_DATE date not null,visit_start_DATETIME timestamp,visit_end_DATE date not null,visit_end_DATETIME timestamp,visit_type_concept_id bigint not null,provider_id bigint,care_site_id bigint,visit_source_value varchar,visit_source_concept_id bigint,admitting_source_concept_id bigint,admitting_source_value varchar,discharge_to_concept_id bigint,discharge_to_source_value varchar,preceding_visit_occurrence_id bigint,trace_id varchar,unit_id varchar,load_table_id varchar); | create table visit_occurrence(visit_occurrence_id bigint not null,person_id bigint not null,visit_concept_id bigint not null,visit_start_DATE date not null,visit_start_DATETIME timestamp,visit_end_DATE date not null,visit_end_DATETIME timestamp,visit_type_concept_id bigint not null,provider_id bigint,care_site_id bigint,visit_source_value varchar,visit_source_concept_id bigint,admitting_source_concept_id bigint,admitting_source_value varchar,discharge_to_concept_id bigint,discharge_to_source_value varchar,preceding_visit_occurrence_id bigint,trace_id varchar,unit_id varchar,load_table_id varchar); |
create table vocabulary(vocabulary_id varchar not null,vocabulary_name varchar not null,vocabulary_reference varchar not null,vocabulary_version varchar,vocabulary_concept_id bigint not null,load_table_id varchar, load_row_id bigint); | create table vocabulary(vocabulary_id varchar not null,vocabulary_name varchar not null,vocabulary_reference varchar not null,vocabulary_version varchar,vocabulary_concept_id bigint not null,load_table_id varchar, load_row_id bigint); |