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onboarding_affiliates [2018/01/24 16:30]
miko [Onboarding steps] 		onboarding_affiliates [2019/01/14 20:45]
acallaha
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 ====== Onboarding for affiliates ====== ====== Onboarding for affiliates ======
 ===== Onboarding steps ===== ===== Onboarding steps =====
 +
   - Get SUNET ID to access the Stanford network. External collaborators will require sponsorship from a Stanford staff.   - Get SUNET ID to access the Stanford network. External collaborators will require sponsorship from a Stanford staff.
-  - Get access to our [[int:lab_information#computing_resources |servers]] (shahlab-dev2, shahlab-db1). Contact Jason Fries. [[https://itservices.stanford.edu/service/vpn| VPN]] is needed for off-campus access and probably on-campus access as well. +  - Get access to our servers. Contact Jason Fries. [[https://itservices.stanford.edu/service/vpn|VPN]] is needed for off-campus access and probably on-campus access as well. 
-  - Identify the [[int:database | databases]] you need. Get authorization from database owner and work with your assigned mentor and Jason Fries to arrange for access. Read and agree to DUA.+  - Identify the [[:int:database|databases]] you need. Get authorization from database owner and work with your assigned mentor and Jason Fries to arrange for access. Read and agree to [[https://shahlab.stanford.edu/_media/dua_for_collaborators_shah_lab.docx|DUA]].
   - Complete the necessary training   - Complete the necessary training
-      - IF you will access db1 AND dev1, you need to complete the following training: +      - IF you will access data containing PHI (e.g. clinical notes), you need to complete the following training: 
-          - Protecting Patient Privacy - sign up via [[https://starsexpress.stanford.edu/index.html?ref=LM_SS_LEARNING.LM_BROWSE_LEARNER.GBL&type=COURSE&code=PRIV-0010|STARS]]  +        - Protecting Patient Privacy - sign up via [[https://axess.sahr.stanford.edu/group/guest/stars?psft_src=/EMPLOYEE/ELM/c/LM_SS_LEARNING.LM_BROWSE_LEARNER.GBL?type=COURSE&code=PRIV-2019|STARS]] 
-          - Protection of Human Subjects - GROUP 7: IRB BioMed/GCP Research - done via [[https://researchcompliance.stanford.edu/hs/new/resources/training/citi.html|CITI]] +        - Protection of Human Subjects - GROUP 7: IRB BioMed/GCP Research - done via [[https://researchcompliance.stanford.edu/hs/new/resources/training/citi.html|CITI]] 
-      - IF you will access ONLY db1, you need to complete the following training: +      - IF you will access ONLY de-identified patient data, you need to complete the following training: 
-          - Protecting Patient Privacy - sign up via [[https://starsexpress.stanford.edu/index.html?ref=LM_SS_LEARNING.LM_BROWSE_LEARNER.GBL&type=COURSE&code=PRIV-0010|STARS]]  +        - Protecting Patient Privacy - sign up via [[https://axess.sahr.stanford.edu/group/guest/stars?psft_src=/EMPLOYEE/ELM/c/LM_SS_LEARNING.LM_BROWSE_LEARNER.GBL?type=COURSE&code=PRIV-2018|STARS]] 
-      - Upload your certificates at: http://shahlab.stanford.edu/lab_members +      - Provide your certificates to Jason to get access 
-  - Understand our [[int:clinical_study|clinical study workflow]] and [[int:annotation| annotation workflow]] +  - Get on the right mailing list 
-  - You are encouraged to set up a wiki page to document your project. [[int:dou_jin| See example.]] +  - Find the person in the lab who can explain the data you will use - talk to them! 
-  - For details regarding specific steps, schedule a one-on-one session with the relevant person +  - Set up a wiki page to document your project. [[:int:callahan:medical_device_surveillance|See example.]] 
-    * Server access: Jason Fries +  - For details regarding specific resources, schedule a one-on-one session with the relevant person 
-    * Data use agreement: Nigam Shah +      * Server access: Jason Fries 
-    * Text processing: Jason Fries +      * Data use agreement: Nigam Shah 
-    * Cohort building: +      * Text processing: Jason Fries 
-      * [[int:clinical_study|Quick guide on querying EMR]] +      * Data/terminologies: Ken Jung, Alison Callahan, Vladimir Polony 
-      * Patient matching +
-    * Data analysis:+
  
 ===== Data sharing and Use Agreement ===== ===== Data sharing and Use Agreement =====
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 ===== How to connect to Dev2 ====== ===== How to connect to Dev2 ======
 If you are off-campus (or on the wireless network), you will need [[https://itservices.stanford.edu/service/vpn| VPN]].\\ If you are off-campus (or on the wireless network), you will need [[https://itservices.stanford.edu/service/vpn| VPN]].\\
-Not to be confused with DB1, this only needs a simple SSH command to connect (open a terminal):+SSH command to connect (open a terminal):
  
 <code>ssh <yourusername>@shahlab-dev2.stanford.edu </code> <code>ssh <yourusername>@shahlab-dev2.stanford.edu </code>
onboarding_affiliates.txt · Last modified: 2021/11/23 17:25 by acallaha

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